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Retrieves a list of available resources in the annotations database of OmniPath

Source: R/annotations.R
annotation_resources.Rd

Get the names of the resources from https://omnipathdb.org/annotations.

Usage

annotation_resources(dataset = NULL, ...)

Arguments

dataset

ignored for this query type

...

optional additional arguments

Value

character vector with the names of the annotation resources

See also

Examples

annotation_resources()
#>  [1] "Adhesome"             "Almen2009"            "Baccin2019"          
#>  [4] "CORUM_Funcat"         "CORUM_GO"             "CSPA"                
#>  [7] "CSPA_celltype"        "CancerDrugsDB"        "CancerGeneCensus"    
#> [10] "CancerSEA"            "CellCall"             "CellCellInteractions"
#> [13] "CellChatDB"           "CellChatDB_complex"   "CellPhoneDB"         
#> [16] "CellPhoneDB_complex"  "CellTalkDB"           "CellTypist"          
#> [19] "Cellinker"            "Cellinker_complex"    "ComPPI"              
#> [22] "CytoSig"              "DGIdb"                "DisGeNet"            
#> [25] "EMBRACE"              "Exocarta"             "GO_Intercell"        
#> [28] "GPCRdb"               "Guide2Pharma"         "HGNC"                
#> [31] "HPA_secretome"        "HPA_subcellular"      "HPA_tissue"          
#> [34] "HPMR"                 "HumanCellMap"         "ICELLNET"            
#> [37] "ICELLNET_complex"     "IntOGen"              "Integrins"           
#> [40] "InterPro"             "KEGG-PC"              "Kirouac2010"         
#> [43] "LOCATE"               "LRdb"                 "Lambert2018"         
#> [46] "MCAM"                 "MSigDB"               "Matrisome"           
#> [49] "MatrixDB"             "Membranome"           "NetPath"             
#> [52] "OPM"                  "PROGENy"              "PanglaoDB"           
#> [55] "Phobius"              "Phosphatome"          "Ramilowski2015"      
#> [58] "Ramilowski_location"  "SIGNOR"               "SignaLink_function"  
#> [61] "SignaLink_pathway"    "Surfaceome"           "TCDB"                
#> [64] "TFcensus"             "TopDB"                "UniProt_family"      
#> [67] "UniProt_keyword"      "UniProt_location"     "UniProt_tissue"      
#> [70] "UniProt_topology"     "Vesiclepedia"         "Wang"                
#> [73] "Zhong2015"            "connectomeDB2020"     "iTALK"               
#> [76] "kinase.com"           "scConnect"            "scConnect_complex"   
#> [79] "talklr"