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Table of Ensembl organisms

Source: R/ensembl.R
ensembl_organisms_raw.Rd

A table with various taxon IDs and metadata about related Ensembl database contents, as shown at https://www.ensembl.org/info/about/species.html. The "Taxon ID" column contains the NCBI Taxonomy identifiers.

Usage

ensembl_organisms_raw()

Value

The table described above as a data frame.

Examples

ens_org <- ensembl_organisms_raw()
ens_org
#> # A tibble: 314 × 8
#>    `Common name`         Scien…¹ Taxon…² Ensem…³ Acces…⁴ Geneb…⁵ Varia…⁶ Regul…⁷
#>    <chr>                 <chr>     <int> <chr>   <chr>   <chr>   <chr>   <chr>  
#>  1 Abingdon island gian… Chelon…  106734 ASM359… GCA_00… Full g… -       -      
#>  2 African ostrich       Struth…  441894 ASM698… GCA_00… Full g… -       -      
#>  3 Agassiz's desert tor… Gopher…   38772 ASM289… GCA_00… Full g… -       -      
#>  4 Algerian mouse        Mus sp…   10096 SPRET_… GCA_00… Extern… -       Y      
#>  5 Alpaca                Vicugn…   30538 vicPac1 -       A gene… -       -      
#>  6 Alpine marmot         Marmot…    9994 marMar… GCA_00… Full g… -       -      
#>  7 Amazon molly          Poecil…   48698 Poecil… GCA_00… Full g… -       -      
#>  8 American beaver       Castor…   51338 C.can_… GCA_00… Full g… -       -      
#>  9 American bison        Bison …   43346 Bison_… GCA_00… Full g… -       -      
#> 10 American black bear   Ursus …    9643 ASM334… GCA_00… Full g… -       -      
#> # … with 304 more rows, and abbreviated variable names ¹​`Scientific name`,
#> #   ²​`Taxon ID`, ³​`Ensembl Assembly`, ⁴​Accession, ⁵​`Genebuild Method`,
#> #   ⁶​`Variation database`, ⁷​`Regulation database`