A table with various taxon IDs and metadata about related Ensembl database contents, as shown at https://www.ensembl.org/info/about/species.html. The "Taxon ID" column contains the NCBI Taxonomy identifiers.
Examples
ens_org <- ensembl_organisms_raw()
ens_org
#> # A tibble: 314 × 8
#> `Common name` Scien…¹ Taxon…² Ensem…³ Acces…⁴ Geneb…⁵ Varia…⁶ Regul…⁷
#> <chr> <chr> <int> <chr> <chr> <chr> <chr> <chr>
#> 1 Abingdon island gian… Chelon… 106734 ASM359… GCA_00… Full g… - -
#> 2 African ostrich Struth… 441894 ASM698… GCA_00… Full g… - -
#> 3 Agassiz's desert tor… Gopher… 38772 ASM289… GCA_00… Full g… - -
#> 4 Algerian mouse Mus sp… 10096 SPRET_… GCA_00… Extern… - Y
#> 5 Alpaca Vicugn… 30538 vicPac1 - A gene… - -
#> 6 Alpine marmot Marmot… 9994 marMar… GCA_00… Full g… - -
#> 7 Amazon molly Poecil… 48698 Poecil… GCA_00… Full g… - -
#> 8 American beaver Castor… 51338 C.can_… GCA_00… Full g… - -
#> 9 American bison Bison … 43346 Bison_… GCA_00… Full g… - -
#> 10 American black bear Ursus … 9643 ASM334… GCA_00… Full g… - -
#> # … with 304 more rows, and abbreviated variable names ¹`Scientific name`,
#> # ²`Taxon ID`, ³`Ensembl Assembly`, ⁴Accession, ⁵`Genebuild Method`,
#> # ⁶`Variation database`, ⁷`Regulation database`