Retrieves a list of the generic categories in the intercell database of OmniPath

Retrieves a list of the generic categories from https://omnipath.org/intercell.

Usage

get_intercell_generic_categories()

Value

character vector with the different intercell main classes

See also

• import_omnipath_intercell

• get_intercell_categories

Examples

get_intercell_generic_categories()
#>  [1] "transmembrane"                       "transmembrane_predicted"            
#>  [3] "peripheral"                          "plasma_membrane"                    
#>  [5] "plasma_membrane_transmembrane"       "plasma_membrane_regulator"          
#>  [7] "plasma_membrane_peripheral"          "secreted"                           
#>  [9] "cell_surface"                        "ecm"                                
#> [11] "ligand"                              "receptor"                           
#> [13] "secreted_enzyme"                     "secreted_peptidase"                 
#> [15] "extracellular"                       "intracellular"                      
#> [17] "receptor_regulator"                  "secreted_receptor"                  
#> [19] "sparc_ecm_regulator"                 "ecm_regulator"                      
#> [21] "ligand_regulator"                    "cell_surface_ligand"                
#> [23] "cell_adhesion"                       "matrix_adhesion"                    
#> [25] "adhesion"                            "matrix_adhesion_regulator"          
#> [27] "cell_surface_enzyme"                 "cell_surface_peptidase"             
#> [29] "secreted_enyzme"                     "extracellular_peptidase"            
#> [31] "secreted_peptidase_inhibitor"        "transporter"                        
#> [33] "ion_channel"                         "ion_channel_regulator"              
#> [35] "gap_junction"                        "tight_junction"                     
#> [37] "adherens_junction"                   "desmosome"                          
#> [39] "intracellular_intercellular_related"