Downloads interactions from the Guide to Pharmacology database
Source:R/guide2pharma.R
guide2pharma_download.Rd
Downloads ligand-receptor interactions from the Guide to Pharmacology (IUPHAR/BPS) database (https://www.guidetopharmacology.org/).
Examples
g2p_data <- guide2pharma_download()
g2p_data
#> # A tibble: 22,867 × 41
#> target targe…¹ targe…² targe…³ targe…⁴ targe…⁵ targe…⁶ targe…⁷ targe…⁸
#> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
#> 1 12S-LOX 1387 NA ALOX12 P18054 ENSG00… NA NA NA
#> 2 15-LOX-1 1388 NA ALOX15 P16050 ENSG00… NA NA NA
#> 3 15-LOX-1 1388 NA ALOX15 P16050 ENSG00… NA NA NA
#> 4 15-LOX-1 1388 NA ALOX15 P16050 ENSG00… NA NA NA
#> 5 15-LOX-1 1388 NA ALOX15 P16050 ENSG00… NA NA NA
#> 6 15-LOX-2 1389 NA ALOX15B O15296 ENSG00… NA NA NA
#> 7 15-LOX-2 1389 NA ALOX15B O15296 ENSG00… NA NA NA
#> 8 3-Mercaptopy… 1446 NA MPST P25325 ENSG00… NA NA NA
#> 9 3-phosphoino… 1519 NA PDPK1 O15530 ENSG00… NA NA NA
#> 10 3-phosphoino… 1519 NA PDPK1 O15530 ENSG00… NA NA NA
#> # … with 22,857 more rows, 32 more variables: target_ligand_gene_symbol <chr>,
#> # target_ligand_uniprot_id <chr>, target_ligand_ensembl_gene_id <chr>,
#> # target_ligand_pubchem_sid <chr>, target_species <chr>, ligand <chr>,
#> # ligand_id <dbl>, ligand_subunit_ids <chr>, ligand_gene_symbol <chr>,
#> # ligand_species <chr>, ligand_pubchem_sid <chr>, approved <lgl>, type <chr>,
#> # action <chr>, action_comment <chr>, selectivity <chr>, endogenous <lgl>,
#> # primary_target <lgl>, concentration_range <chr>, affinity_units <chr>, …
# # A tibble: 21,586 x 38
# target target_id target_gene_sym. target_uniprot target_ensembl_.
# <chr> <dbl> <chr> <chr> <chr>
# 1 12S-L. 1387 ALOX12 P18054 ENSG00000108839
# 2 15-LO. 1388 ALOX15 P16050 ENSG00000161905
# 3 15-LO. 1388 ALOX15 P16050 ENSG00000161905
# 4 15-LO. 1388 ALOX15 P16050 ENSG00000161905
# # . with 21,576 more rows, and 33 more variables: target_ligand <chr>,
# # target_ligand_id <chr>, target_ligand_gene_symbol <chr>,
# ... (truncated)