Imports enzyme-substrate relationships from OmniPathSource:
Imports the enzyme-substrate (more exactly, enzyme-PTM) relationship database from https://omnipathdb.org/enzsub
import_omnipath_enzsub( resources = NULL, organism = 9606, fields = NULL, default_fields = TRUE, references_by_resource = TRUE, exclude = NULL, ... )
PTMs not reported in these databases are removed. See
get_ptms_databasesfor more information.
PTMs are available for human, mouse and rat. Choose among: 9606 human (default), 10116 rat and 10090 Mouse
You can define here additional fields to be added to the result. If used, set the next argument,
Whether to include the default fields (columns) for the query type. If
FALSE, only the fields defined by the user in the
fieldsargument will be added.
if FALSE, removes the resource name prefixes from the references (PubMed IDs); this way the information which reference comes from which resource will be lost and the PubMed IDs will be unique.
Character: datasets or resources to exclude.
Optional additional arguments.
enzsub <- import_omnipath_enzsub( resources = c('PhosphoSite', 'SIGNOR'), organism = 9606 )