All post-translational interactions from OmniPathSource:
Imports interactions from all post-translational datasets of OmniPath. The datasets are "omnipath", "kinaseextra", "pathwayextra" and "ligrecextra".
import_post_translational_interactions( resources = NULL, organism = 9606, exclude = NULL, references_by_resource = TRUE, strict_evidences = FALSE, ... )
interactions not reported in these databases are removed. See
get_interaction_resourcesfor more information.
Interactions are available for human, mouse and rat. Choose among: 9606 human (default), 10116 rat and 10090 Mouse
Character: datasets or resources to exclude.
if FALSE, removes the resource name prefixes from the references (PubMed IDs); this way the information which reference comes from which resource will be lost and the PubMed IDs will be unique.
Logical: restrict the evidences to the queried datasets and resources. If set to FALSE, the directions and effect signs and references might be based on other datasets and resources.
optional additional arguments
interactions <- import_post_translational_interactions( resources = c('BioGRID') )