All post-translational interactions from OmniPath
Source:R/interactions.R
import_post_translational_interactions.Rd
Imports interactions from all post-translational datasets of OmniPath. The datasets are "omnipath", "kinaseextra", "pathwayextra" and "ligrecextra".
Usage
import_post_translational_interactions(
resources = NULL,
organism = 9606,
exclude = NULL,
references_by_resource = TRUE,
...
)
Arguments
- resources
interactions not reported in these databases are removed. See
get_interaction_resources
for more information.- organism
Interactions are available for human, mouse and rat. Choose among: 9606 human (default), 10116 rat and 10090 Mouse
- exclude
Character: datasets or resources to exclude.
- references_by_resource
if FALSE, removes the resource name prefixes from the references (PubMed IDs); this way the information which reference comes from which resource will be lost and the PubMed IDs will be unique.
- ...
optional additional arguments
Examples
interactions <-
import_post_translational_interactions(
resources = c('BioGRID')
)