List of templates in the KEGG REST API
Examples
kegg_api_templates()
#> $info
#> $info[[1]]
#> $info[[1]]$database
#> [1] "pathway" "brite" "module" "ko" "genome" "vg"
#> [7] "vp" "ag" "compound" "glycan" "reaction" "rclass"
#> [13] "enzyme" "disease" "drug" "dgroup" "genes" "ligand"
#> [19] "kegg" "network" "variant" "organism" "<org>"
#>
#>
#>
#> $list
#> $list[[1]]
#> $list[[1]]$database
#> [1] "pathway"
#>
#> $list[[1]]$organism
#> [1] "<org>"
#>
#>
#> $list[[2]]
#> $list[[2]]$database
#> [1] "brite"
#>
#> $list[[2]]$option
#> [1] "br" "jp" "ko" "<org>"
#>
#>
#> $list[[3]]
#> $list[[3]]$database
#> [1] "pathway" "brite" "module" "ko" "genome" "vg"
#> [7] "vp" "ag" "compound" "glycan" "reaction" "rclass"
#> [13] "enzyme" "disease" "drug" "dgroup" "network" "variant"
#> [19] "organism" "<org>"
#>
#>
#> $list[[4]]
#> $list[[4]]$dbentries
#> [1] "pathway" "brite" "module" "ko" "genome" "vg"
#> [7] "vp" "ag" "compound" "glycan" "reaction" "rclass"
#> [13] "enzyme" "disease" "drug" "dgroup" "network" "variant"
#> [19] "<org>"
#>
#>
#>
#> $find
#> $find[[1]]
#> $find[[1]]$database
#> [1] "compound" "drug"
#>
#> $find[[1]]$query
#> NULL
#>
#> $find[[1]]$option
#> [1] "formula" "exact_mass" "mol_weight" "nop"
#>
#>
#> $find[[2]]
#> $find[[2]]$database
#> [1] "pathway" "brite" "module" "ko" "genome" "vg"
#> [7] "vp" "ag" "compound" "glycan" "reaction" "rclass"
#> [13] "enzyme" "disease" "drug" "dgroup" "genes" "ligand"
#> [19] "network" "variant" "<org>"
#>
#> $find[[2]]$query
#> NULL
#>
#>
#>
#> $get
#> $get[[1]]
#> $get[[1]]$dbentries
#> [1] "pathway" "brite" "module" "ko" "genome"
#> [6] "vg" "vp" "ag" "compound" "glycan"
#> [11] "reaction" "rclass" "enzyme" "disease" "drug"
#> [16] "dgroup" "network" "variant" "<org>" "disease_ja"
#> [21] "compound_ja" "dgroup_ja" "drug_ja"
#>
#> $get[[1]]$option
#> [1] "aaseq" "ntseq" "mol" "kcf" "image" "conf" "kgml" "json"
#>
#>
#>
#> $conv
#> $conv[[1]]
#> $conv[[1]]$target_db
#> [1] "ncbi-geneid" "ncbi-proteinid" "uniprot"
#>
#> $conv[[1]]$source_db
#> [1] "<org>"
#>
#>
#> $conv[[2]]
#> $conv[[2]]$target_db
#> [1] "<org>"
#>
#> $conv[[2]]$source_db
#> [1] "ncbi-geneid" "ncbi-proteinid" "uniprot"
#>
#>
#> $conv[[3]]
#> $conv[[3]]$target_db
#> [1] "pubchem" "chebi"
#>
#> $conv[[3]]$source_db
#> [1] "compound" "glycan" "drug"
#>
#>
#> $conv[[4]]
#> $conv[[4]]$target_db
#> [1] "compound" "glycan" "drug"
#>
#> $conv[[4]]$source_db
#> [1] "pubchem" "chebi"
#>
#>
#> $conv[[5]]
#> $conv[[5]]$target_db
#> [1] "<org>" "ncbi-geneid" "ncbi-proteinid" "uniprot"
#> [5] "genes"
#>
#> $conv[[5]]$dbentries
#> [1] "<org>" "ncbi-geneid" "ncbi-proteinid" "uniprot"
#> [5] "genes"
#>
#>
#> $conv[[6]]
#> $conv[[6]]$target_db
#> [1] "pubchem" "chebi" "compound" "glycan" "drug"
#>
#> $conv[[6]]$dbentries
#> [1] "pubchem" "chebi" "compound" "glycan" "drug"
#>
#>
#>
#> $link
#> $link[[1]]
#> $link[[1]]$target_db
#> [1] "drug" "atc" "jtc"
#>
#> $link[[1]]$source_db
#> [1] "drug" "atc" "jtc"
#>
#> $link[[1]]$option
#> [1] "n-triple" "turtle"
#>
#>
#> $link[[2]]
#> $link[[2]]$target_db
#> [1] "drug" "atc" "jtc"
#>
#> $link[[2]]$dbentries
#> [1] "drug" "atc" "jtc"
#>
#> $link[[2]]$option
#> [1] "n-triple" "turtle"
#>
#>
#> $link[[3]]
#> $link[[3]]$target_db
#> [1] "pathway" "brite" "module" "ko" "genome" "vg"
#> [7] "vp" "ag" "compound" "glycan" "reaction" "rclass"
#> [13] "enzyme" "disease" "drug" "dgroup" "network" "variant"
#> [19] "<org>" "pubmed" "atc" "jtc" "ndc" "yk"
#>
#> $link[[3]]$source_db
#> [1] "pathway" "brite" "module" "ko" "genome" "vg"
#> [7] "vp" "ag" "compound" "glycan" "reaction" "rclass"
#> [13] "enzyme" "disease" "drug" "dgroup" "network" "variant"
#> [19] "<org>" "pubmed" "atc" "jtc" "ndc" "yk"
#>
#>
#> $link[[4]]
#> $link[[4]]$target_db
#> [1] "pathway" "brite" "module" "ko" "genome" "vg"
#> [7] "vp" "ag" "compound" "glycan" "reaction" "rclass"
#> [13] "enzyme" "disease" "drug" "dgroup" "network" "variant"
#> [19] "<org>" "pubmed" "atc" "jtc" "ndc" "yk"
#>
#> $link[[4]]$dbentries
#> [1] "pathway" "brite" "module" "ko" "genome" "vg"
#> [7] "vp" "ag" "compound" "glycan" "reaction" "rclass"
#> [13] "enzyme" "disease" "drug" "dgroup" "network" "variant"
#> [19] "<org>" "pubmed" "atc" "jtc" "ndc" "yk"
#>
#>
#>
#> $ddi
#> $ddi[[1]]
#> $ddi[[1]]$dbentries
#> [1] "drug" "ndc" "yj"
#>
#>
#>