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Protein pathway annotations

Source: R/kegg.R
kegg_pathway_annotations.Rd

Downloads all KEGG pathways and creates a table of protein-pathway annotations.

Usage

kegg_pathway_annotations(pathways = NULL)

Arguments

pathways

A table of KEGG pathways as produced by kegg_pathways_download.

Value

A data frame (tibble) with UniProt IDs and pathway names.

See also

kegg_pathways_download

Examples

if (FALSE) {
kegg_pw_annot <- kegg_pathway_annotations()
kegg_pw_annot
# # A tibble: 7,341 x 4
#    uniprot genesymbol pathway                pathway_id
#    <chr>   <chr>      <chr>                  <chr>
#  1 Q03113  GNA12      MAPK signaling pathway hsa04010
#  2 Q9Y4G8  RAPGEF2    MAPK signaling pathway hsa04010
#  3 Q13972  RASGRF1    MAPK signaling pathway hsa04010
#  4 O95267  RASGRP1    MAPK signaling pathway hsa04010
#  5 P62834  RAP1A      MAPK signaling pathway hsa04010
# # . with 7,336 more rows
}