NicheNet signaling network from Harmonizome — nichenet_signaling_network_harmonizome • OmnipathR

Builds signaling network prior knowledge for NicheNet using Harmonizome

Usage

nichenet_signaling_network_harmonizome(
  datasets = c("phosphositeplus", "kea", "depod"),
  ...
)

Arguments

datasets: The datasets to use. For possible values please refer to default value and the Harmonizome webpage.
...: Ignored.

Value

A network data frame (tibble) with signaling interactions suitable for use with NicheNet.

Examples

# use only KEA and PhosphoSite:
hz_signaling_network <- nichenet_signaling_network_harmonizome(
    datasets = c('kea', 'phosphositeplus')
)