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Databases are resources which might be costly to load but can be used many times by functions which usually automatically load and retrieve them from the database manager. Each database has a lifetime and will be unloaded automatically upon expiry.

Usage

omnipath_show_db()

Value

A data frame with the built in database definitions.

Examples

database_definitions <- omnipath_show_db()
database_definitions
#> # A tibble: 20 × 10
#>    name     last_used           lifet…¹ package loader loader_param latest_param
#>    <chr>    <dttm>                <dbl> <chr>   <chr>  <list>       <list>      
#>  1 Gene On… 2023-03-22 18:53:41     300 Omnipa… go_on… <named list> <named list>
#>  2 Gene On… NA                      300 Omnipa… go_on… <named list> <lgl [1]>   
#>  3 Gene On… NA                      300 Omnipa… go_on… <named list> <lgl [1]>   
#>  4 Gene On… NA                      300 Omnipa… go_on… <named list> <lgl [1]>   
#>  5 Gene On… 2023-03-22 18:57:47     300 Omnipa… go_on… <named list> <named list>
#>  6 Gene On… NA                      300 Omnipa… go_on… <named list> <lgl [1]>   
#>  7 Gene On… NA                      300 Omnipa… go_on… <named list> <lgl [1]>   
#>  8 Gene On… NA                      300 Omnipa… go_on… <named list> <lgl [1]>   
#>  9 Gene On… NA                      300 Omnipa… go_on… <named list> <lgl [1]>   
#> 10 Gene On… NA                      300 Omnipa… go_on… <named list> <lgl [1]>   
#> 11 Gene On… NA                      300 Omnipa… go_on… <named list> <lgl [1]>   
#> 12 Gene On… NA                      300 Omnipa… go_on… <named list> <lgl [1]>   
#> 13 Gene On… NA                      300 Omnipa… go_on… <named list> <lgl [1]>   
#> 14 Gene On… NA                      300 Omnipa… go_on… <named list> <lgl [1]>   
#> 15 GO anno… NA                      300 Omnipa… go_an… <named list> <lgl [1]>   
#> 16 UniProt… 2023-03-22 18:57:45     300 Omnipa… unipr… <named list> <named list>
#> 17 Ensembl… 2023-03-22 19:47:23   10800 Omnipa… taxon… <NULL>       <NULL>      
#> 18 All Swi… 2023-03-22 18:56:34   10800 Omnipa… all_u… <named list> <named list>
#> 19 All TrE… 2023-03-22 18:56:57   10800 Omnipa… all_u… <named list> <named list>
#> 20 OmniPat… NA                      300 Omnipa… build… <named list> <lgl [1]>   
#> # … with 3 more variables: loaded <lgl>, db <list>, key <chr>, and abbreviated
#> #   variable name ¹​lifetime
# # A tibble: 14 x 10
#    name       last_used           lifetime package  loader    loader_p.
#    <chr>      <dttm>                 <dbl> <chr>    <chr>     <list>
#  1 Gene Onto. 2021-04-04 20:19:15      300 Omnipat. go_ontol. <named l.
#  2 Gene Onto. NA                       300 Omnipat. go_ontol. <named l.
#  3 Gene Onto. NA                       300 Omnipat. go_ontol. <named l.
#  4 Gene Onto. NA                       300 Omnipat. go_ontol. <named l.
#  5 Gene Onto. NA                       300 Omnipat. go_ontol. <named l.
# ... (truncated)
# # . with 4 more variables: latest_param <list>, loaded <lgl>, db <list>,
# #   key <chr>