Filter PrePPI interactions by scoresSource:
Filter PrePPI interactions by scores
A data frame of PrePPI interactions as provided by
Minimum values for the scores. The available scores are: str, protpep, str_max, red, ort, phy, coexp, go, total, exp and final. See more about the scores at
The operator to combine the scores with: either
'|'. With the former, only records where all scores are above the threshold will be kept; with the latter, records where at least one score is above its threshold will be kept.
preppi <- preppi_download() preppi_filtered <- preppi_filter(preppi, red = 10, str = 4.5, ort = 1) nrow(preppi_filtered) #>  8443 #  8443