OmniPath query parameters — query_info • OmnipathR

All parameter names and their possible values for a query type. Note: parameters with `NULL` values have too many possible values to list them.

Usage

query_info(query_type)

Arguments

query_type: Character: interactions, annotations, complexes, enz_sub or intercell.

Value

A named list with the parameter names and their possible values.

Examples

ia_param <- query_info('interactions')
ia_param$datasets[1:5]
#> [1] "collectri"   "dorothea"    "kinaseextra" "ligrecextra" "lncrna_mrna"
# [1] "dorothea"    "kinaseextra" "ligrecextra" "lncrna_mrna" "mirnatarget"