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Return table from RaMP database

Source: R/ramp.R
ramp_table.Rd

Return table from RaMP database

Usage

ramp_table(name, version = RAMP_LATEST_VERSION)

Arguments

name

Character. The name of the RaMP table to fetch.

version

Character. The version of RaMP to download.

Value

Character vector of table names in the RaMP SQLite database.

See also

Examples

ramp_table('source')
#> # A tibble: 810,652 × 8
#>    sourceId         rampId   IDtype geneOrCompound commonName priorityHMDBStatus
#>    <chr>            <chr>    <chr>  <chr>          <chr>      <chr>             
#>  1 hmdb:HMDB0000001 RAMP_C_… hmdb   compound       1-Methylh… quantified        
#>  2 hmdb:HMDB0000479 RAMP_C_… hmdb   compound       3-Methylh… quantified        
#>  3 chebi:50599      RAMP_C_… chebi  compound       1-Methylh… quantified        
#>  4 chemspider:83153 RAMP_C_… chems… compound       1-Methylh… quantified        
#>  5 kegg:C01152      RAMP_C_… kegg   compound       1-Methylh… quantified        
#>  6 pubchem:92105    RAMP_C_… pubch… compound       1-Methylh… quantified        
#>  7 CAS:332-80-9     RAMP_C_… CAS    compound       1-Methylh… quantified        
#>  8 hmdb:HMDB00001   RAMP_C_… hmdb   compound       1-Methylh… quantified        
#>  9 hmdb:HMDB0004935 RAMP_C_… hmdb   compound       1-Methylh… quantified        
#> 10 hmdb:HMDB0006703 RAMP_C_… hmdb   compound       1-Methylh… quantified        
#> # ℹ 810,642 more rows
#> # ℹ 2 more variables: dataSource <chr>, pathwayCount <int>