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Return table from RaMP database

Source: R/ramp.R
ramp_table.Rd

Return table from RaMP database

Usage

ramp_table(name, version = RAMP_LATEST_VERSION)

Arguments

name

Character. The name of the RaMP table to fetch.

version

Character. The version of RaMP to download.

Value

A data frame (tibble) of one table from the RaMP SQLite database.

See also

Examples

ramp_table('source')
#> # A tibble: 810,652 × 8
#>    sourceId         rampId   IDtype geneOrCompound commonName priorityHMDBStatus
#>    <chr>            <chr>    <chr>  <chr>          <chr>      <chr>             
#>  1 hmdb:HMDB0000001 RAMP_C_… hmdb   compound       1-Methylh… quantified        
#>  2 hmdb:HMDB0000479 RAMP_C_… hmdb   compound       3-Methylh… quantified        
#>  3 chebi:50599      RAMP_C_… chebi  compound       1-Methylh… quantified        
#>  4 chemspider:83153 RAMP_C_… chems… compound       1-Methylh… quantified        
#>  5 kegg:C01152      RAMP_C_… kegg   compound       1-Methylh… quantified        
#>  6 pubchem:92105    RAMP_C_… pubch… compound       1-Methylh… quantified        
#>  7 CAS:332-80-9     RAMP_C_… CAS    compound       1-Methylh… quantified        
#>  8 hmdb:HMDB00001   RAMP_C_… hmdb   compound       1-Methylh… quantified        
#>  9 hmdb:HMDB0004935 RAMP_C_… hmdb   compound       1-Methylh… quantified        
#> 10 hmdb:HMDB0006703 RAMP_C_… hmdb   compound       1-Methylh… quantified        
#> # ℹ 810,642 more rows
#> # ℹ 2 more variables: dataSource <chr>, pathwayCount <int>