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Collect resource names from a data frame

Usage

resources_in(data)

Arguments

data

A data frame from an OmniPath query.

Value

Character: resource names occuring in the data frame.

Examples

pathways <- omnipath_interactions()
resources_in(pathways)
#>  [1] "ACSN"                        "ACSN_SignaLink3"            
#>  [3] "ARN"                         "Adhesome"                   
#>  [5] "AlzPathway"                  "BEL-Large-Corpus_ProtMapper"
#>  [7] "Baccin2019"                  "BioGRID"                    
#>  [9] "CA1"                         "CancerCellMap"              
#> [11] "CellCall"                    "CellChatDB"                 
#> [13] "CellChatDB-cofactors"        "CellPhoneDB"                
#> [15] "CellPhoneDB_Cellinker"       "CellTalkDB"                 
#> [17] "Cellinker"                   "Cui2007"                    
#> [19] "DEPOD"                       "DIP"                        
#> [21] "DLRP_Cellinker"              "DLRP_talklr"                
#> [23] "DOMINO"                      "DeathDomain"                
#> [25] "ELM"                         "EMBRACE"                    
#> [27] "Fantom5_LRdb"                "Guide2Pharma"               
#> [29] "Guide2Pharma_Cellinker"      "Guide2Pharma_LRdb"          
#> [31] "Guide2Pharma_talklr"         "HPMR"                       
#> [33] "HPMR_Cellinker"              "HPMR_LRdb"                  
#> [35] "HPMR_talklr"                 "HPRD"                       
#> [37] "HPRD-phos"                   "HPRD_KEA"                   
#> [39] "HPRD_LRdb"                   "HPRD_MIMP"                  
#> [41] "HPRD_talklr"                 "HuRI"                       
#> [43] "ICELLNET"                    "InnateDB"                   
#> [45] "InnateDB_SignaLink3"         "IntAct"                     
#> [47] "KEA"                         "KEGG-MEDICUS"               
#> [49] "Kinexus_KEA"                 "Kirouac2010"                
#> [51] "LRdb"                        "Li2012"                     
#> [53] "Lit-BM-17"                   "MIMP"                       
#> [55] "MPPI"                        "Macrophage"                 
#> [57] "MatrixDB"                    "NCI-PID_ProtMapper"         
#> [59] "NRF2ome"                     "NetPath"                    
#> [61] "NetworKIN_KEA"               "PhosphoNetworks"            
#> [63] "PhosphoPoint"                "PhosphoSite"                
#> [65] "PhosphoSite_KEA"             "PhosphoSite_MIMP"           
#> [67] "PhosphoSite_ProtMapper"      "PhosphoSite_noref"          
#> [69] "ProtMapper"                  "REACH_ProtMapper"           
#> [71] "RLIMS-P_ProtMapper"          "Ramilowski2015"             
#> [73] "Ramilowski2015_Baccin2019"   "Reactome_LRdb"              
#> [75] "Reactome_ProtMapper"         "Reactome_SignaLink3"        
#> [77] "SIGNOR"                      "SIGNOR_ProtMapper"          
#> [79] "SPIKE"                       "SPIKE_LC"                   
#> [81] "STRING_talklr"               "SignaLink3"                 
#> [83] "Sparser_ProtMapper"          "TCRcuration_SignaLink3"     
#> [85] "TRIP"                        "UniProt_LRdb"               
#> [87] "Wang"                        "Wojtowicz2020"              
#> [89] "connectomeDB2020"            "dbPTM"                      
#> [91] "iPTMnet"                     "iTALK"                      
#> [93] "phosphoELM"                  "phosphoELM_KEA"             
#> [95] "phosphoELM_MIMP"             "scConnect"                  
#> [97] "talklr"