Downloads the list of transcription factors from TF census
Source:R/tfcensus.R
tfcensus_download.Rd
Vaquerizas et al. published in 2009 a list of transcription factors. This function retrieves Supplementary Table 2 from the article (http://www.nature.com/nrg/journal/v10/n4/index.html).
Examples
tfcensus <- tfcensus_download()
tfcensus
#> # A tibble: 1,987 × 7
#> Class `Ensembl ID` `IPI ID` Inter…¹ Inter…² HGNC …³ Tissu…⁴
#> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
#> 1 a ENSG00000001167 IPI00218470;IPI00333568 NA IPR001… NFYA NA
#> 2 a ENSG00000004848 IPI00045066 IPR000… NA ARX NA
#> 3 a ENSG00000005073 IPI00010754;IPI00807582 IPR001… NA HOXA11 uterus
#> 4 a ENSG00000005513 IPI00299069;IPI00386303 IPR000… NA SOX8 NA
#> 5 a ENSG00000005889 IPI00012336;IPI0016938… IPR007… IPR006… ZFX general
#> 6 a ENSG00000006377 IPI00008195 IPR000… NA DLX6 NA
#> 7 a ENSG00000006468 IPI00221065;IPI0030643… IPR000… NA ETV1 adrena…
#> 8 a ENSG00000007372 IPI00218800;IPI0044907… IPR001… NA PAX6 NA
#> 9 a ENSG00000007866 IPI00385455;IPI0041234… NA IPR000… TEAD3 placen…
#> 10 a ENSG00000007968 IPI00290548 IPR003… IPR015… E2F2 NA
#> # … with 1,977 more rows, and abbreviated variable names ¹`Interpro DBD`,
#> # ²`Interpro DNA-binding family`, ³`HGNC symbol`, ⁴`Tissue-specificity`
# # A tibble: 1,987 x 7
# Class `Ensembl ID` `IPI ID` `Interpro DBD` `Interpro DNA-b.
# <chr> <chr> <chr> <chr> <chr>
# 1 a ENSG0000000. IPI0021. NA IPR001289
# 2 a ENSG0000000. IPI0004. IPR000047;IPR. NA
# 3 a ENSG0000000. IPI0001. IPR001356;IPR. NA
# 4 a ENSG0000000. IPI0029. IPR000910;IPR. NA
# 5 a ENSG0000000. IPI0001. IPR007087;IPR. IPR006794
# # . with 1,977 more rows, and 2 more variables: `HGNC symbol` <chr>,
# # `Tissue-specificity` <chr>