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Downloads the list of transcription factors from TF census

Source: R/tfcensus.R
tfcensus_download.Rd

Vaquerizas et al. published in 2009 a list of transcription factors. This function retrieves Supplementary Table 2 from the article (http://www.nature.com/nrg/journal/v10/n4/index.html).

Usage

tfcensus_download()

Value

A data frame (tibble) listing transcription factors.

Examples

tfcensus <- tfcensus_download()
tfcensus
#> # A tibble: 1,987 × 7
#>    Class `Ensembl ID`    `IPI ID`          `Interpro DBD` Interpro DNA-binding…¹
#>    <chr> <chr>           <chr>             <chr>          <chr>                 
#>  1 a     ENSG00000001167 IPI00218470;IPI0… NA             IPR001289             
#>  2 a     ENSG00000004848 IPI00045066       IPR000047;IPR… NA                    
#>  3 a     ENSG00000005073 IPI00010754;IPI0… IPR001356;IPR… NA                    
#>  4 a     ENSG00000005513 IPI00299069;IPI0… IPR000910;IPR… NA                    
#>  5 a     ENSG00000005889 IPI00012336;IPI0… IPR007087;IPR… IPR006794             
#>  6 a     ENSG00000006377 IPI00008195       IPR000047;IPR… NA                    
#>  7 a     ENSG00000006468 IPI00221065;IPI0… IPR000418;IPR… NA                    
#>  8 a     ENSG00000007372 IPI00218800;IPI0… IPR001356;IPR… NA                    
#>  9 a     ENSG00000007866 IPI00385455;IPI0… NA             IPR000818;IPR016361   
#> 10 a     ENSG00000007968 IPI00290548       IPR003316;IPR… IPR015633             
#> # ℹ 1,977 more rows
#> # ℹ abbreviated name: ¹​`Interpro DNA-binding family`
#> # ℹ 2 more variables: `HGNC symbol` <chr>, `Tissue-specificity` <chr>
# # A tibble: 1,987 x 7
#    Class `Ensembl ID` `IPI ID` `Interpro DBD` `Interpro DNA-b.
#    <chr> <chr>        <chr>    <chr>          <chr>
#  1 a     ENSG0000000. IPI0021. NA             IPR001289
#  2 a     ENSG0000000. IPI0004. IPR000047;IPR. NA
#  3 a     ENSG0000000. IPI0001. IPR001356;IPR. NA
#  4 a     ENSG0000000. IPI0029. IPR000910;IPR. NA
#  5 a     ENSG0000000. IPI0001. IPR007087;IPR. IPR006794
# # . with 1,977 more rows, and 2 more variables: `HGNC symbol` <chr>,
# # `Tissue-specificity` <chr>