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Downloads the BioPlex version 2.0 interaction dataset

Source: R/bioplex.R
bioplex2.Rd

This dataset contains ~56,000 interactions detected in HEK293T cells using 5,891 baits. More details at https://bioplex.hms.harvard.edu/interactions.php

Usage

bioplex2()

Value

Data frame (tibble) with interactions.

See also

Examples

bioplex_interactions <- bioplex2()
nrow(bioplex_interactions)
#> [1] 56553
# [1] 56553
colnames(bioplex_interactions)
#> [1] "GeneA"            "GeneB"            "UniprotA"         "UniprotB"        
#> [5] "SymbolA"          "SymbolB"          "p_wrong"          "p_no_interaction"
#> [9] "p_interaction"   
# [1] "GeneA"         "GeneB"        "UniprotA"   "UniprotB"
# [5] "SymbolA"       "SymbolB"      "p_wrong"    "p_no_interaction"
# [9] "p_interaction"