Downloads the BioPlex HCT116 version 1.0 interaction dataset

This dataset contains ~71,000 interactions detected in HCT116 cells using 5,522 baits. More details at https://bioplex.hms.harvard.edu/interactions.php.

Usage

bioplex_hct116_1()

Value

Data frame (tibble) with interactions.

See also

• bioplex1

• bioplex2

• bioplex3

• bioplex_all

Examples

bioplex_interactions <- bioplex_hct116_1()
nrow(bioplex_interactions)
#> [1] 70966
# [1] 70966
colnames(bioplex_interactions)
#> [1] "GeneA"            "GeneB"            "UniprotA"         "UniprotB"        
#> [5] "SymbolA"          "SymbolB"          "p_wrong"          "p_no_interaction"
#> [9] "p_interaction"   
# [1] "GeneA"         "GeneB"        "UniprotA"   "UniprotB"
# [5] "SymbolA"       "SymbolB"      "p_wrong"    "p_no_interaction"
# [9] "p_interaction"