Load a built in database
Usage
load_db(key, param = list())
Arguments
- key
Character: the key of the database to load. For a list of available keys see
omnipath_show_db
.- param
List: override the defaults or pass further parameters to the database loader function. See the loader functions and their default parameters in
omnipath_show_db
.
Details
This function loads a database which is stored within the package
namespace until its expiry. The loaded database is accessible by
get_db
and the loading process is typically initiated by
get_db
, not by the users directly.
Examples
load_db('go_slim')
omnipath_show_db()
#> # A tibble: 20 × 10
#> name last_used lifet…¹ package loader loader_param latest_param
#> <chr> <dttm> <dbl> <chr> <chr> <list> <list>
#> 1 Gene On… 2023-03-22 18:53:41 300 Omnipa… go_on… <named list> <named list>
#> 2 Gene On… NA 300 Omnipa… go_on… <named list> <lgl [1]>
#> 3 Gene On… NA 300 Omnipa… go_on… <named list> <lgl [1]>
#> 4 Gene On… NA 300 Omnipa… go_on… <named list> <lgl [1]>
#> 5 Gene On… 2023-03-22 18:57:47 300 Omnipa… go_on… <named list> <named list>
#> 6 Gene On… NA 300 Omnipa… go_on… <named list> <lgl [1]>
#> 7 Gene On… NA 300 Omnipa… go_on… <named list> <lgl [1]>
#> 8 Gene On… NA 300 Omnipa… go_on… <named list> <lgl [1]>
#> 9 Gene On… NA 300 Omnipa… go_on… <named list> <lgl [1]>
#> 10 Gene On… NA 300 Omnipa… go_on… <named list> <lgl [1]>
#> 11 Gene On… NA 300 Omnipa… go_on… <named list> <lgl [1]>
#> 12 Gene On… NA 300 Omnipa… go_on… <named list> <lgl [1]>
#> 13 Gene On… NA 300 Omnipa… go_on… <named list> <lgl [1]>
#> 14 Gene On… NA 300 Omnipa… go_on… <named list> <lgl [1]>
#> 15 GO anno… NA 300 Omnipa… go_an… <named list> <lgl [1]>
#> 16 UniProt… 2023-03-22 18:57:45 300 Omnipa… unipr… <named list> <named list>
#> 17 Ensembl… 2023-03-22 18:57:46 10800 Omnipa… taxon… <NULL> <NULL>
#> 18 All Swi… 2023-03-22 18:56:34 10800 Omnipa… all_u… <named list> <named list>
#> 19 All TrE… 2023-03-22 18:56:57 10800 Omnipa… all_u… <named list> <named list>
#> 20 OmniPat… NA 300 Omnipa… build… <named list> <lgl [1]>
#> # … with 3 more variables: loaded <lgl>, db <list>, key <chr>, and abbreviated
#> # variable name ¹lifetime