NicheNet gene regulatory network from EVEXSource:
Builds a gene regulatory network using data from the EVEX database and converts it to a format suitable for NicheNet.
nichenet_gr_network_evex( top_confidence = 0.75, indirect = FALSE, regulation_of_expression = FALSE )
Double, between 0 and 1. Threshold based on the quantile of the confidence score.
Logical: whether to include indirect interactions.
Logical: whether to include also the "regulation of expression" type interactions.
Data frame of interactions in NicheNet format.
Data frame with gene regulatory interactions in NicheNet format.