NicheNet signaling network from EVEX

Builds signaling network prior knowledge for NicheNet from the EVEX database.

Usage

nichenet_signaling_network_evex(top_confidence = 0.75, indirect = FALSE, ...)

Arguments

top_confidence

Double, between 0 and 1. Threshold based on the quantile of the confidence score.

indirect

Logical: whether to include indirect interactions.

...

Ignored.

Value

A network data frame (tibble) with signaling interactions suitable for use with NicheNet.

See also

• evex_download

• nichenet_signaling_network

Examples

ev_signaling_network <- nichenet_signaling_network_evex(
    top_confidence = .9
)