Interaction records having certain extra attributes

Interaction records having certain extra attributes

Usage

with_extra_attrs(data, ...)

Arguments

data

An interaction data frame.

...

The name(s) of the extra attributes; NSE is supported.

Value

The data frame filtered to the records having the extra attribute.

See also

• extra_attrs

• has_extra_attrs

• extra_attrs_to_cols

• filter_extra_attrs

• extra_attr_values

Examples

i <- import_omnipath_interactions(fields = 'extra_attrs')
with_extra_attrs(i, Macrophage_type)
#> # A tibble: 400 × 16
#>    source target sourc…¹ targe…² is_di…³ is_st…⁴ is_in…⁵ conse…⁶ conse…⁷ conse…⁸
#>    <chr>  <chr>  <chr>   <chr>     <dbl>   <dbl>   <dbl>   <dbl>   <dbl>   <dbl>
#>  1 Q16539 P49137 MAPK14  MAPKAP…       1       1       0       1       1       0
#>  2 O15111 P19838 CHUK    NFKB1         1       1       1       1       0       1
#>  3 Q14164 Q92985 IKBKE   IRF7          1       1       0       1       1       0
#>  4 Q13490 P42574 BIRC2   CASP3         1       0       1       1       0       1
#>  5 P42575 P55957 CASP2   BID           1       1       0       1       1       0
#>  6 Q14790 P42574 CASP8   CASP3         1       1       0       1       1       0
#>  7 Q02750 P27361 MAP2K1  MAPK3         1       1       0       1       1       0
#>  8 P27361 P51812 MAPK3   RPS6KA3       1       1       0       1       1       0
#>  9 P28482 Q15418 MAPK1   RPS6KA1       1       1       0       1       1       0
#> 10 P28482 P51812 MAPK1   RPS6KA3       1       1       0       1       1       0
#> # … with 390 more rows, 6 more variables: extra_attrs <list>, sources <chr>,
#> #   references <chr>, curation_effort <dbl>, n_references <dbl>,
#> #   n_resources <int>, and abbreviated variable names ¹​source_genesymbol,
#> #   ²​target_genesymbol, ³​is_directed, ⁴​is_stimulation, ⁵​is_inhibition,
#> #   ⁶​consensus_direction, ⁷​consensus_stimulation, ⁸​consensus_inhibition