Interactions having references
Arguments
- data
An interaction data frame.
- resources
Character: consider only these resources. If `NULL`, records with any reference will be accepted.
Examples
cc <- import_post_translational_interactions(resources = 'CellChatDB')
with_references(cc, 'CellChatDB')
#> # A tibble: 569 × 15
#> source target sourc…¹ targe…² is_di…³ is_st…⁴ is_in…⁵ conse…⁶ conse…⁷ conse…⁸
#> <chr> <chr> <chr> <chr> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
#> 1 Q9Y219 P46531 JAG2 NOTCH1 1 1 1 1 1 0
#> 2 O00548 P46531 DLL1 NOTCH1 1 1 0 1 1 0
#> 3 P05019 P08069 IGF1 IGF1R 1 1 0 1 1 0
#> 4 P78504 P46531 JAG1 NOTCH1 1 1 1 1 1 0
#> 5 P01344 P11717 IGF2 IGF2R 1 1 0 1 1 0
#> 6 P49771 P36888 FLT3LG FLT3 1 1 0 1 1 0
#> 7 P01344 P08069 IGF2 IGF1R 1 1 0 1 1 0
#> 8 P01138 P04629 NGF NTRK1 1 1 0 1 1 0
#> 9 P14210 P08581 HGF MET 1 1 0 1 1 0
#> 10 P01308 P06213 INS INSR 1 1 0 1 1 0
#> # … with 559 more rows, 5 more variables: sources <chr>, references <chr>,
#> # curation_effort <dbl>, n_references <dbl>, n_resources <int>, and
#> # abbreviated variable names ¹source_genesymbol, ²target_genesymbol,
#> # ³is_directed, ⁴is_stimulation, ⁵is_inhibition, ⁶consensus_direction,
#> # ⁷consensus_stimulation, ⁸consensus_inhibition