Interactions having references
Arguments
- data
An interaction data frame.
- resources
Character: consider only these resources. If `NULL`, records with any reference will be accepted.
Examples
cc <- import_post_translational_interactions(resources = 'CellChatDB')
with_references(cc, 'CellChatDB')
#> # A tibble: 569 × 15
#> source target source_genesymbol target_genesymbol is_directed is_stimulation
#> <chr> <chr> <chr> <chr> <dbl> <dbl>
#> 1 Q9Y219 P46531 JAG2 NOTCH1 1 1
#> 2 O00548 P46531 DLL1 NOTCH1 1 1
#> 3 P05019 P08069 IGF1 IGF1R 1 1
#> 4 P78504 P46531 JAG1 NOTCH1 1 1
#> 5 P01344 P11717 IGF2 IGF2R 1 1
#> 6 P49771 P36888 FLT3LG FLT3 1 1
#> 7 P01344 P08069 IGF2 IGF1R 1 1
#> 8 P42081 P10747 CD86 CD28 1 1
#> 9 P33681 P10747 CD80 CD28 1 1
#> 10 P04083 P25090 ANXA1 FPR2 1 1
#> # ℹ 559 more rows
#> # ℹ 9 more variables: is_inhibition <dbl>, consensus_direction <dbl>,
#> # consensus_stimulation <dbl>, consensus_inhibition <dbl>, sources <chr>,
#> # references <chr>, curation_effort <dbl>, n_references <dbl>,
#> # n_resources <int>